PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00253g00721.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 387aa    MW: 42218.1 Da    PI: 9.039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00253g00721.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.6e-091136227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++ ++C+F+H+p
  Peaxi162Scf00253g00721.1 11 GEPDCSYYIRTGLCRFRSTCRFNHPP 36
                              6899********************97 PP

2zf-CCCH39.68.7e-135680226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              ++++C+++++tGtCk+G++CkF+H+
  Peaxi162Scf00253g00721.1 56 GEPECQYYLKTGTCKFGATCKFHHP 80
                              5799********************8 PP

3zf-CCCH38.71.6e-12104127427
                               ---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                               ++C +++r+G+Ck+G++CkF+H++
  Peaxi162Scf00253g00721.1 104 VECTYYMRSGQCKFGSTCKFHHPQ 127
                               79********************97 PP

4zf-CCCH37.44.3e-12257281327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C+f+++tG Ck+G+ C+F+H++
  Peaxi162Scf00253g00721.1 257 QPDCQFYMKTGDCKFGAVCRFNHPR 281
                               789********************96 PP

5zf-CCCH39.68.6e-13301326126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ++++lC f++++G+Ck+G++CkF H+
  Peaxi162Scf00253g00721.1 301 PGEPLCIFYSQYGICKFGPSCKFDHP 326
                               589**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0016936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915937IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-41136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-51437IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-55481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6435482IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-105680IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-46079IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10104127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4106126IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.798254282IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8257281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5258284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4260282IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849300328IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10302326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4305325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MESGPYPIRE GEPDCSYYIR TGLCRFRSTC RFNHPPNRKL ALAAVSIKGE YPERMGEPEC  60
QYYLKTGTCK FGATCKFHHP GDKAGIAGRV TLNVLGYPLR TNEVECTYYM RSGQCKFGST  120
CKFHHPQPSN MMVSLGSTVY SPVLSATTPG QLSYPLSRAS FLSGARWQGP SSYAPLLVPQ  180
GVVSLPGFSY SGQLGSASSL EGQKQIAGNS RVYRSSRSSD KATMGSDGMI SSYRAASLPL  240
GYESLQKENV FPERVGQPDC QFYMKTGDCK FGAVCRFNHP RQRLVHPPNC LLSAIGLPLR  300
PGEPLCIFYS QYGICKFGPS CKFDHPIGTF TYTMSASSST DSPLIWHLLG SSSGTNALTL  360
ASEGIVEAAS TKPRRLLLSE SRTMQPG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009611380.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
RefseqXP_016481312.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLK4D5F00.0K4D5F0_SOLLC; Uncharacterized protein
STRINGSolyc11g008900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1